Phylogram

phytozome_10_2.59053124: Homeobox-leucine zipper protein family IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like) GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0043565 (sequence-specific DNA binding) ***- AT4G37790.1

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Cross References

phytozome_10_2.59053124: Homeobox-leucine zipper protein family IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like) GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0043565 (sequence-specific DNA binding) ***- AT4G37790.1

DatabaseAccession
phytozome_10_2 Phytozome 10.2 Angiosperm Gene Families59053124
Analysis

phytozome_10_2.59053124: Homeobox-leucine zipper protein family IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like) GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0043565 (sequence-specific DNA binding) ***- AT4G37790.1

NameDescriptionMetadata
Phytozome 10.2 Angiosperm Gene Family Derived TreesThe gene families at LegumeInfo were built on the Phytozome 10.2 Angiosperm-level gene family models. Sequences from each species were placed in families based on best Hidden Markov Model match (using hmmsearch from the Hmmer package, v 3.1b2), with a minimum E-value match threshold of 0.1. Sequences in each family were realigned to the family's HMM using hmmalign, and then trimmed to include only match-state characters. Trees were generated using FastTree, and descriptors for the families were created using AHRD (Automatic assignment of human readable descriptions) on the consensus representation of the family generated with hmmemit.Phytozome/HMMER/FastTree 10.2/3/2 2015-05-03 22:08:34.83291