Phylogram

phytozome_10_2.59181411: tRNA guanosine-2'-O-methyltransferase TRM13-like protein IPR007871 (Methyltransferase TRM13), IPR021721 (Zinc finger, CCCH-type, TRM13), IPR022776 (TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain) GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity) **** Medtr1g032120.1

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Cross References

phytozome_10_2.59181411: tRNA guanosine-2'-O-methyltransferase TRM13-like protein IPR007871 (Methyltransferase TRM13), IPR021721 (Zinc finger, CCCH-type, TRM13), IPR022776 (TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain) GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity) **** Medtr1g032120.1

DatabaseAccession
phytozome_10_2 Phytozome 10.2 Angiosperm Gene Families59181411
Analysis

phytozome_10_2.59181411: tRNA guanosine-2'-O-methyltransferase TRM13-like protein IPR007871 (Methyltransferase TRM13), IPR021721 (Zinc finger, CCCH-type, TRM13), IPR022776 (TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain) GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity) **** Medtr1g032120.1

NameDescriptionMetadata
Phytozome 10.2 Angiosperm Gene Family Derived TreesThe gene families at LegumeInfo were built on the Phytozome 10.2 Angiosperm-level gene family models. Sequences from each species were placed in families based on best Hidden Markov Model match (using hmmsearch from the Hmmer package, v 3.1b2), with a minimum E-value match threshold of 0.1. Sequences in each family were realigned to the family's HMM using hmmalign, and then trimmed to include only match-state characters. Trees were generated using FastTree, and descriptors for the families were created using AHRD (Automatic assignment of human readable descriptions) on the consensus representation of the family generated with hmmemit.Phytozome/HMMER/FastTree 10.2/3/2 2015-05-03 22:08:34.83291