Cicer arietinum contigs

Cicer arietinum (chickpea) sequencing and 454 singlets by Hiremath,

At a zoom level > 2 Mbp, a heat map showing transcript density will be displayed.
Select "Show 2 Mbp" or less in the "Zoom" drop down menu for a more detailed view that shows each aligned sequence.

Figure legend:

  • Red: There was at least one additional reported alignment. Click "Show all locations" to find all alignments for this sequence.
  • Black: There were no other reported alignments.

Aligned with exonerate 2.2.0 (--percent 50 --bestn 10) and filtered with 75% identity and 50% coverage cutoffs.

References:

  1. Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, Lohse M, Xiao Y, Town CD, Cook DR, May GD, Varshney RK. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol J. 2011 Oct;9(8):922-31. doi: 10.1111/j.1467-7652.2011.00625.x. Epub 2011 May 25. [PubMed]