Cicer arietinum transcriptome assembly - v2

Cicer arietinum (chickpea) transcript assemblies.

At a zoom level > 2 Mbp, a heat map showing transcript density will be displayed.
Select "Show 2 Mbp" or less in the "Zoom" drop down menu for a more detailed view that shows each aligned sequence.

Figure legend:

  • Red: There was at least one additional reported alignment. Click "Show all locations" to find all alignments for this sequence.
  • Green: There were no other reported alignments.

Aligned with GMAP 2013-05-09 (--min-intronlength=11 --intronlength=11000 and filtered with 95% identity and 50% coverage cutoffs.

References:

  1. Kudapa, H et al., (2014) Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications. PLoS ONE (9)1:e86039 10.1371/journal.pone.0086039 (PubMed)