Enter the species and parameters below for alignment of sequences using a Client to a local BLAT Server:

BLAT is a tool for aligning gene/transcript sequences, or highly-similar DNA sequences, to a genome.
BLAT performs spliced alignment, allowing an alignment to span introns.

Alignments will be displayed in the genome browser of the selected species.

Query sequence type:
Input Sequence To Align:
Or load an Example Sequence.
Only a single input sequence (20 bp or longer), raw seq or FASTA is acceptable.
Species to align against:
Number of Hits to Return:
Minimum Percent Identity: