Vigna datasets

Gyeongwon.gnm3.ann1.3Nz5: Directory of gene annotations, called on an assembly of pseudomolecules and remaining scaffold sequences
Shumari.gnm1.ann1.8BRS: Vigna angularis accession Shumari genome annotation files

Gyeongwon.gnm3.syn.wCFF: Synteny between Vigna angularis Gyeongwon and other species accessions calculated by LIS.

VC1973A.gnm6.3nL8: Directory of scaffold assemblies and pseudomolecule assemblies.
VC1973A.gnm7.SB53: Vigna radiata (mungbean) accession VC1973A, assembly version 7 (2021)

VC1973A.gnm6.ann1.M1Qs: Gene annotations
VC1973A.gnm7.ann1.RWBG: Annotation version 1 Vigna radiata (mungbean) accession VC1973A, assembly version 7 (2021)

VC1973A.gnm6.mrk.Sandhu_Singh_2020: SNP markers from the mung bean Illumina iSelect BeadArray, with associations reported in Sandhu Singh 2020 relative to gnm6
VC1973A.gnm6.mrk.microsatellites: SSR markers and genomic locations on the genome sequence of Vigna radiata, accession VC1973A
VC1973A.gnm7.mrk.Chiteri_Rairdin_2024: SNP markers from the mung bean Illumina iSelect BeadArray, with associations reported in Sandhu Singh 2020 relative to gnm6, and projected into gnm7 coordinates

VC1973A.gnm6.syn.mcwy: Synteny between Vigna radiata VC1973A and other species accessions calculated by LIS.

VC1973A.gnm6.div.Sandhu_Singh_2020: Genetic variants for Vigna radiata, assessed across 500 accessions to create the Iowamung bean panel; genotyped relative to accession VC1973A.gnm6
VC1973A.gnm7.div.Sandhu_Singh_2020: Genetic variants for Vigna radiata, assessed across 500 accessions to create the Iowamung bean panel; genotyped relative to accession VC1973A.gnm7

CB5-2.gnm1.WDTB: Vigna unguiculata genome assembly for CB5-2
IT97K-499-35.gnm1.QnBW: Vigna unguiculata accession IT97K-499-35 genome assembly 1.0
Sanzi.gnm1.YNCM: Vigna unguiculata genome assembly for Sanzi
Suvita2.gnm1.5QLL: Vigna unguiculata genome assembly for Suvita2
TZ30.gnm1.TX9W: Vigna unguiculata genome assembly for TZ30
UCR779.gnm1.M7KZ: Vigna unguiculata genome assembly for UCR779
Xiabao_II.gnm1.WDBP: Vigna unguiculata genome assembly for Xiabao_II
ZN016.gnm1.997F: Vigna unguiculata genome assembly for ZN016

CB5-2.gnm1.ann1.0GKC: Genome annotation for Vigna unguiculata CB5-2
IT97K-499-35.gnm1.ann1.zb5D: Vigna unguiculata accession IT97K-499-35; JGI annotation version 1 on assembly 1
IT97K-499-35.gnm1.ann2.FD7K: Genome annotation version 2 for Vigna unguiculata IT97K-499-35
Sanzi.gnm1.ann1.HFH8: Genome annotation for Vigna unguiculata Sanzi
Suvita2.gnm1.ann1.1PF6: Genome annotation for Vigna unguiculata Suvita2
TZ30.gnm1.ann2.59NL: Genome annotation for Vigna unguiculata TZ30
UCR779.gnm1.ann1.VF6G: Genome annotation for Vigna unguiculata UCR779
Xiabao_II.gnm1.ann1.4JFL: Genome annotation for Vigna unguiculata Xiabao_II
ZN016.gnm1.ann2.C7YV: Genome annotation for Vigna unguiculata ZN016

IT97K-499-35.gnm1.ann2.expr.IT97K-499-35.Yao_Jiang_2016: Black-eyed pea gene expression atlas (IT97K-499-35)

IT97K-499-35.gnm1.mrk.Angira_Zhang_2020: Flanking SNP markers for First flower and Plant height QTLs discovered in a population of 175 F2:8 RILs derived from a cross between the Cowpeas GoldenEyeCream and IT98K-476-8. Marker positions determined by homology vs. the Vigna unguiculata IT97K-499-35 v1.0 assembly.
IT97K-499-35.gnm1.mrk.Cowpea1MSelectedSNPs: SNP mining from 183,118 ESTs sequenced from 17 cDNA libraries yielded ≈10,000 high-confidence SNPs from which an Illumina 1,536-SNP GoldenGate genotyping array was developed.

IT97K-499-35.gnm1.syn.W3NY: Synteny between Vigna unguiculata IT97K-499-35 and other species accessions calculated by LIS.

IT97K-499-35.gnm1.div.Huynh_Ehlers_2018: VCF file containing genotype information for 305 F8 RILs, 98.74% homozygous on average while diverse in agronomic traits, mapped to the cowpea IT97K-499-35.gnm1 genome.