Datasets

Medicago datasets

Medicago sativa

Genomes

CADL_HM342.gnm1.rVNY
Genome assembly of Medicago sativa CADL (HM342)
PI464715.gnm1.8GK6
Pseudomolecule assemblies and unanchored contigs representing 1 haplotype per chromosome for diploid progenitor Medicago sativa spp. caerulea PI464715
RegenSY27x.gnm0_9.2VSM
Genome assembly of Medicago sativa RegenSY27x
XinJiangDaYe.gnm1.12MR
Pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe
Zhongmu_No_1.gnm1.TRQW
Pseudomolecule assemblies and unanchored contigs representing 1 haplotype per chromosome for Medicago sativa Zhongmu No. 1

Annotations

XinJiangDaYe.gnm1.ann1.RKB9
Gene annotations for pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe

Expression

XinJiangDaYe.gnm1.ann1.expr.B47_F56.ORourke_Fu_2015
Alfalfa expression atlas for M. sativa ssp. sativa (B47) and M. sativa ssp. falcata (F56) roots, root nodules, leaves, flowers, and elongating and post-elongation stem internodes.

Markers

XinJiangDaYe.gnm1.mrk.3KAlfaDArTagBICU01
3KAlfaDArTagBICU01 is a DArTag panel of 3K loci distributed across the alfalfa genome for use in molecular breeding and genomic insight

Diversity

mixed.tcp.div.Li_Acharya_2012
genotype variants called with respect to a transcriptome assembly, from 27 alfalfa genotypes, from Li, Acharya et al., 2012

Medicago truncatula

Genomes

A17.gnm5.MVZ2
Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17
A17_HM341.gnm4.2GZ9
Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17 (HM341)
HM002.gnm1.TWKJ
Genome assembly for Medicago truncatula (HM002)
HM004.gnm1.L7PM
Genome assembly for Medicago truncatula (HM004)
HM005.gnm1.BQQH
Genome assembly for Medicago truncatula (HM005)
HM006.gnm1.XKYH
Genome assembly for Medicago truncatula (HM006)
HM010.gnm1.YDPY
Genome assembly for Medicago truncatula (HM010)
HM017.gnm1.HSRX
Genome assembly for Medicago truncatula (HM017)
HM018.gnm1.3NVM
Genome assembly for Medicago truncatula (HM018)
HM020.gnm1.PNGN
Genome assembly for Medicago truncatula (HM020)
HM022.gnm1.B190
Genome assembly for Medicago truncatula (HM022)
HM023.gnm1.FFHH
Genome assembly for Medicago truncatula (HM023)
HM026.gnm1.PH3S
Genome assembly for Medicago truncatula (HM026)
HM034.gnm1.6VW9
Genome assembly for Medicago truncatula (HM034)
HM050.gnm1.9JPP
Genome assembly for Medicago truncatula (HM050)
HM056.gnm1.JBKN
Genome assembly for Medicago truncatula (HM056)
HM058.gnm1.JVBP
Genome assembly for Medicago truncatula (HM058)
HM060.gnm1.V7B2
Genome assembly for Medicago truncatula (HM060)
HM078.gnm1.Q3TM
Genome assembly for Medicago truncatula (HM078)
HM095.gnm1.FBQK
Genome assembly for Medicago truncatula (HM095)
HM125.gnm1.GFN2
Genome assembly for Medicago truncatula (HM125)
HM129.gnm1.9HG9
Genome assembly for Medicago truncatula (HM129)
HM185.gnm1.1G05
Genome assembly for Medicago truncatula (HM185)
HM324.gnm1.SJSJ
Genome assembly for Medicago truncatula (HM324)
R108.gnmHiC_1.7RWS
An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.
R108_HM340.gnm1.XT6J
Genome assembly for Medicago truncatula R108 (HM340)

Annotations

A17.gnm5.ann1_6.L2RX
Genome annotation for Medicago truncatula (A17)
A17_HM341.gnm4.ann2.G3ZY
Genome annotation for Medicago truncatula (A17 HM341)
HM004.gnm1.ann1.2XTB
Genome annotation for Medicago truncatula (HM004)
HM010.gnm1.ann1.WV9J
Genome annotation for Medicago truncatula (HM010)
HM022.gnm1.ann1.6C8N
Genome annotation for Medicago truncatula (HM022)
HM023.gnm1.ann1.WZN8
Genome annotation for Medicago truncatula (HM023)
HM034.gnm1.ann1.YR6S
Genome annotation for Medicago truncatula (HM034)
HM050.gnm1.ann1.GWRX
Genome annotation for Medicago truncatula (HM050)
HM056.gnm1.ann1.CHP6
Genome annotation for Medicago truncatula (HM056)
HM058.gnm1.ann1.LXPZ
Genome annotation for Medicago truncatula (HM058).
HM060.gnm1.ann1.H41P
Genome annotation for Medicago truncatula (HM060)
HM078.gnm1.ann1.3RNP
Genome annotation for Medicago truncatula (HM078).
HM095.gnm1.ann1.55W4
Genome annotation for Medicago truncatula (HM095)
HM125.gnm1.ann1.KY5W
Genome annotation for Medicago truncatula (HM125).
HM129.gnm1.ann1.7FTD
Genome annotation for Medicago truncatula (HM129)
HM185.gnm1.ann1.GB3D
Genome annotation for Medicago truncatula (HM185)
HM324.gnm1.ann1.SQH2
Genome annotation for Medicago truncatula (HM324)
R108.gnmHiC_1.ann1.Y8NH
An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.
R108_HM340.gnm1.ann1.85YW
Genome annotation for Medicago truncatula R108 (HM340)

Expression

A17_HM341.gnm4.ann2.expr.He_Vagner_2009
Affymetrix GeneChip expression data from the Noble Medicago truncatula Gene Expression Atlas

Diversity

A17.gnm5.div.Epstein_Burghardt_2022
Variant calling against Mt5.0 reference from Illumina-based whole genome resequencing across accessions from Medicago HapMap Collection.
A17_HM341.gnm4.div.Stanton-Geddes_Paape_2013
Variant calling from Illumina-based whole genome resequencing across accessions from Medicago HapMap Collection.

Medicago ruthenica

Genomes

Xinghe.gnm1.KKFS
Pseudomolecule assembly and unanchored contigs for wild diploid Medicago ruthenica Xinghe

Medicago polymorpha

Genomes

Huaiyang_Jinhuacai.gnm1.ZH4B
Pseudomolecule assembly and unanchored contigs for diploid Medicago polymorpha Huaiyang Jinhuacai